Single cell sequencing of Kanda river: in P06 - SRA

SRX20561492: Single cell sequencing of Kanda river: in P06
1 ILLUMINA (Illumina HiSeq X) run: 282,777 spots, 85.4M bases, 28.4Mb downloads

Design: single amplified genomes

Submitted by: Waseda University

Study: Metagenomic profiling of antibiotic resistance genes and bacterial community along an urban river, the Kanda River in Japan

PRJNA976879 • SRP439879 • All experiments • All runs

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As emerging containments, antibiotics resistance genes (ARGs) in urban rivers threaten ecological and public health. To gain insights into ARGs dissemination, ARG resistomes and their association in the riverine ecosystems, ARG profiles and microbial distribution characteristics in the Kanda river were investigated via metagenomic sequencing and 16S rRNA sequencing, respectively.

Sample: MISAG Single Amplified Genome sample from Kanda river

SAMN35442253 • SRS17866463 • All experiments • All runs

Organism: bacterium

Library:

Name: SAG_0388

Instrument: Illumina HiSeq X

Strategy: WGA

Source: GENOMIC SINGLE CELL

Selection: PCR

Layout: PAIRED

Runs: 1 run, 282,777 spots, 85.4M bases, 28.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR24788745	282,777	85.4M	28.4Mb	2024-10-18

ID:: 27988492

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